|
0
|
1 <tool id="fastqdump" name="fastq-dump">
|
|
|
2 <description>convert SRA to FASTQ</description>
|
|
|
3 <command>/Users/xuebing/tools/sratoolkit.2.1.9-mac32/fastq-dump -A $input -M $minReadLen -Z > $out_file1 </command>
|
|
|
4 <inputs>
|
|
|
5 <param name="input" format="sra" type="data" label="Original file (SRA)"/>
|
|
|
6 <param name="minReadLen" size="10" type="integer" value="10" label="minimum read length to output"/>
|
|
|
7 </inputs>
|
|
|
8 <outputs>
|
|
|
9 <data format="fastq" name="out_file1" />
|
|
|
10 </outputs>
|
|
|
11 <help>
|
|
|
12
|
|
|
13 **What it does**
|
|
|
14
|
|
|
15 This is a wrapper of the fastq-dump tool from sra-toolkit. See http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software
|
|
|
16
|
|
|
17 </help>
|
|
|
18 </tool>
|
