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1 <tool id="fastamarkov" name="background model">
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2 <description>of DNA sequence</description>
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3 <command>cat $input | fasta-get-markov -m $m $norc > $output 2> err.txt
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4
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5 </command>
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6 <inputs>
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7 <param name="input" type="data" format="fasta" label="Sequence file (FASTA)"/>
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8 <param name="m" size="10" type="integer" value="0" label="Order of Markov model to use"/>
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9 <param name="norc" label="Combine forward and reverse complement frequencies" type="boolean" truevalue="" falsevalue="-norc" checked="True"/>
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10 </inputs>
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11 <outputs>
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12 <data format="txt" name="output" />
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13 </outputs>
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14 <help>
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15
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16 **What it does**
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17
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18 This tool generates a markov model from a fasta sequence file.
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19
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20 </help>
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21 </tool>
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