Mercurial > repos > xuebing > sharplab_seq_motif

comparison mytools/alignvis.r @ 0:39217fa39ff2

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author xuebing
date Tue, 13 Mar 2012 23:34:52 -0400
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-1:000000000000 0:39217fa39ff2
1 args <- commandArgs(TRUE)
2 x <- read.table(args[1])
3 pdf(args[2])
4 #visualize the profile with heatmap
5 srt <- sort(x[,2],index.return=T) # sort by total number of reads
6 image(-t(log(as.matrix(x[srt$ix[1:nrow(x)],3:ncol(x)],nc=ncol(x)-2))),col=gray.colors(100))
7 dev.off()
8