Mercurial > repos > xuebing > sharplab_seq_motif
comparison mytools/fastamarkov.xml @ 0:39217fa39ff2
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| author | xuebing |
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| date | Tue, 13 Mar 2012 23:34:52 -0400 |
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| -1:000000000000 | 0:39217fa39ff2 |
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| 1 <tool id="fastamarkov" name="background model"> | |
| 2 <description>of DNA sequence</description> | |
| 3 <command>cat $input | fasta-get-markov -m $m $norc > $output 2> err.txt | |
| 4 | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input" type="data" format="fasta" label="Sequence file (FASTA)"/> | |
| 8 <param name="m" size="10" type="integer" value="0" label="Order of Markov model to use"/> | |
| 9 <param name="norc" label="Combine forward and reverse complement frequencies" type="boolean" truevalue="" falsevalue="-norc" checked="True"/> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data format="txt" name="output" /> | |
| 13 </outputs> | |
| 14 <help> | |
| 15 | |
| 16 **What it does** | |
| 17 | |
| 18 This tool generates a markov model from a fasta sequence file. | |
| 19 | |
| 20 </help> | |
| 21 </tool> |