Mercurial > repos > xuebing > sharplab_seq_motif
comparison mytools/fastashuffle1.xml @ 0:39217fa39ff2
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| author | xuebing |
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| date | Tue, 13 Mar 2012 23:34:52 -0400 |
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| -1:000000000000 | 0:39217fa39ff2 |
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| 1 <tool id="seqshuffle" name="shuffle sequences"> | |
| 2 <description>preserving mono-nucleotide frequency</description> | |
| 3 <command>cat $input | fasta-shuffle-letters > $output </command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="fasta" name="output" /> | |
| 9 </outputs> | |
| 10 <help> | |
| 11 | |
| 12 **Description** | |
| 13 | |
| 14 shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency. | |
| 15 | |
| 16 </help> | |
| 17 </tool> |