Mercurial > repos > xuebing > sharplab_seq_motif

comparison mytools/memelogo.xml @ 0:39217fa39ff2

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author xuebing
date Tue, 13 Mar 2012 23:34:52 -0400
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1 <tool id="memelogo" name="motif logo">
2 <description>of MEME motif</description>
3 <command>ceqlogo -i $input -o tmp.eps -t $title -x ''
4 &amp;&amp; ps2pdf -dEPSCrop tmp.eps $output
5 </command>
6 <inputs>
7 <param name="input" type="data" format="txt" label="MEME motif file"/>
8 <param name="title" type='text' size="50" label="Title" value="motif1"/>
9 </inputs>
10 <outputs>
11 <data format="pdf" name="output" />
12 </outputs>
13 <help>
14
15 **Description**
16
17 Generate sequence logo for MEME motif file. See details here:
18
19 http://meme.sdsc.edu/meme/doc/ceqlogo.html
20
21 **Example output**
22
23 .. image:: ./static/images/memelogo.png
24
25 </help>
26 </tool>