Mercurial > repos > xuebing > sharplab_seq_motif
view mytools/fastamarkov.xml @ 2:7cc64021dc90
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author | xuebing |
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date | Fri, 16 Mar 2012 13:59:16 -0400 |
parents | 39217fa39ff2 |
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<tool id="fastamarkov" name="background model"> <description>of DNA sequence</description> <command>cat $input | fasta-get-markov -m $m $norc > $output 2> err.txt </command> <inputs> <param name="input" type="data" format="fasta" label="Sequence file (FASTA)"/> <param name="m" size="10" type="integer" value="0" label="Order of Markov model to use"/> <param name="norc" label="Combine forward and reverse complement frequencies" type="boolean" truevalue="" falsevalue="-norc" checked="True"/> </inputs> <outputs> <data format="txt" name="output" /> </outputs> <help> **What it does** This tool generates a markov model from a fasta sequence file. </help> </tool>