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11
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1 <tool id="metaintv_ext" name="aggregrate binned-average">
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2 <description>from bigwig (allow extension)</description>
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3 <command interpreter="python">metaintv_ext.py $bwfile $intvfile $exts $nbins $outfile $outplot > $outlog </command>
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4 <inputs>
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5 <param name="intvfile" format="interval" type="data" label="Interval file"/>
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6 <param name="bwfile" format="bigwig" type="data" label="BigWig file"/>
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7 <param name="exts" type="text" size="80" value="100,50,50,100" label="extensions"/>
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8 <param name="nbins" type="text" size="80" value="10,10,10" label="number of bins"/>
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9
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10 </inputs>
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11 <outputs>
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12 <data format="txt" name="outlog" label="${tool.name} on ${on_string}[log]"/>
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13 <data format="tabular" name="outfile" label="${tool.name} on ${on_string}[data]"/>
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14 <data format="pdf" name="outplot" label="${tool.name} on ${on_string}[plot]"/>
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15 </outputs>
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16 <help>
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17
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18 .. class:: infomark
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19
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20 To be added
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21
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22 </help>
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23 </tool>
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