|
11
|
1 <tool id="fastamarkov" name="background model">
|
|
|
2 <description>of DNA sequence</description>
|
|
|
3 <command>cat $input | fasta-get-markov -m $m $norc > $output 2> err.txt
|
|
|
4
|
|
|
5 </command>
|
|
|
6 <inputs>
|
|
|
7 <param name="input" type="data" format="fasta" label="Sequence file (FASTA)"/>
|
|
|
8 <param name="m" size="10" type="integer" value="0" label="Order of Markov model to use"/>
|
|
|
9 <param name="norc" label="Combine forward and reverse complement frequencies" type="boolean" truevalue="" falsevalue="-norc" checked="True"/>
|
|
|
10 </inputs>
|
|
|
11 <outputs>
|
|
|
12 <data format="txt" name="output" />
|
|
|
13 </outputs>
|
|
|
14 <help>
|
|
|
15
|
|
|
16 **What it does**
|
|
|
17
|
|
|
18 This tool generates a markov model from a fasta sequence file.
|
|
|
19
|
|
|
20 </help>
|
|
|
21 </tool>
|
