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1 <?xml version="1.0"?>
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2 <!--
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3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
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4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
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5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
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6 -->
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7 <tool name="BX main" id="bx_browser" tool_type="data_source">
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8 <description>browser</description>
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9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
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10 <inputs action="http://main.genome-browser.bx.psu.edu/cgi-bin/hgTables" check_values="false" method="get">
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11 <display>go to BX Browser $GALAXY_URL</display>
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12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
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13 <param name="tool_id" type="hidden" value="bx_browser" />
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14 <param name="sendToGalaxy" type="hidden" value="1" />
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15 <param name="hgta_compressType" type="hidden" value="none" />
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16 <param name="hgta_outputType" type="hidden" value="bed" />
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17 </inputs>
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18 <request_param_translation>
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19 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
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20 <request_param galaxy_name="URL" remote_name="URL" missing="" />
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21 <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
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22 <request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
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23 <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
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24 <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
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25 <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
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26 <value_translation>
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27 <value galaxy_value="tabular" remote_value="primaryTable" />
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28 <value galaxy_value="tabular" remote_value="selectedFields" />
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29 <value galaxy_value="wig" remote_value="wigData" />
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30 <value galaxy_value="interval" remote_value="tab" />
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31 <value galaxy_value="html" remote_value="hyperlinks" />
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32 <value galaxy_value="fasta" remote_value="sequence" />
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33 </value_translation>
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34 </request_param>
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35 </request_param_translation>
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36 <uihints minwidth="800"/>
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37 <outputs>
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38 <data name="output" format="tabular" />
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39 </outputs>
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40 <options sanitize="False" refresh="True"/>
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41 </tool>
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