annotate tools/emboss_5/emboss_btwisted.xml @ 0:9071e359b9a3

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
1 <tool id="EMBOSS: btwisted5" name="btwisted" version="5.0.0">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
2 <description>Calculates the twisting in a B-DNA sequence</description>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
4 <command>btwisted -sequence $input1 -outfile $out_file1 -auto</command>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
5 <inputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
6 <param format="data" name="input1" type="data">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
7 <label>On query</label>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
8 </param>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
9 </inputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
10 <outputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
11 <data format="btwisted" name="out_file1" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
12 </outputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
13 <tests>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
14 <test>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
15 <param name="input1" value="2.fasta"/>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
16 <output name="out_file1" file="emboss_btwisted_out.btwisted"/>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
17 </test>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
18 </tests>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
19 <help>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
20 You can view the original documentation here_.
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
21
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
22 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/btwisted.html
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
23 </help>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
24 </tool>