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1 <tool id="EMBOSS: cpgplot15" name="cpgplot" version="5.0.0">
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2 <description>Plot CpG rich areas</description>
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3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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4 <command interpreter="perl">emboss_cpgplot_wrapper.pl cpgplot -sequence $input1 -window $window -minlen $minlen -minpc $minpc -outfile $outfile -graph png -goutfile $goutfile -outfeat $outfeat -minoe $minoe -auto</command>
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5 <inputs>
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6 <param format="data" name="input1" type="data">
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7 <label>On query</label>
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8 </param>
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9 <param name="window" size="4" type="integer" value="100">
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10 <label>Window Size</label>
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11 </param>
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12 <param name="minlen" size="4" type="integer" value="200">
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13 <label>Minimum length</label>
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14 </param>
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15 <param name="minoe" size="4" type="float" value="0.6">
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16 <label>Minimum average observed to expected ratio</label>
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17 </param>
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18 <param name="minpc" size="4" type="float" value="50.0">
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19 <label>Minimum average percentage of G plus C</label>
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20 </param>
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21 </inputs>
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22 <outputs>
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23 <data format="cpgplot" name="outfile" />
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24 <data format="png" name="goutfile" />
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25 <data format="gff" name="outfeat" />
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26 </outputs>
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27 <code file="emboss_format_corrector.py" />
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28 <help>
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29 You can view the original documentation here_.
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30
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31 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cpgplot.html
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32 </help>
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33 </tool> |
