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1 <tool id="EMBOSS: dotmatcher24" name="dotmatcher" version="5.0.0">
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2 <description>Displays a thresholded dotplot of two sequences</description>
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3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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4 <command interpreter="perl">emboss_single_outputfile_wrapper.pl dotmatcher -asequence $input1 -bsequence $input2 -goutfile $out_file1 -windowsize $windowsize -threshold $threshold -graph png -xygraph png
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5 -auto</command>
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6 <inputs>
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7 <param format="data" name="input1" type="data">
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8 <label>Sequence 1</label>
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9 </param>
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10 <param format="data" name="input2" type="data">
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11 <label>Sequence 2</label>
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12 </param>
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13 <param name="windowsize" size="4" type="text" value="10">
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14 <label>Window size</label>
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15 </param>
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16 <param name="threshold" size="4" type="text" value="23">
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17 <label>Threshold</label>
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18 </param>
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19 </inputs>
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20 <outputs>
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21 <data format="png" name="out_file1" />
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22 </outputs>
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23 <!-- functional tests not possible since image output contains file name information and timestamp -->
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24 <help>
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25 You can view the original documentation here_.
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26
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27 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dotmatcher.html
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28 </help>
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29 </tool> |
