|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <!--
|
|
|
3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
|
|
|
4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
|
|
|
5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
|
|
|
6 -->
|
|
|
7 <tool name="Ratmine" id="ratmine" tool_type="data_source">
|
|
|
8 <description>server</description>
|
|
|
9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
|
|
|
10 <inputs action="http://ratmine.mcw.edu/ratmine/begin.do" check_values="false" method="get">
|
|
|
11 <display>go to Ratmine server $GALAXY_URL</display>
|
|
|
12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=ratmine" />
|
|
|
13 </inputs>
|
|
|
14 <request_param_translation>
|
|
|
15 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
|
|
|
16 <request_param galaxy_name="URL" remote_name="URL" missing="" />
|
|
|
17 <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
|
|
|
18 <request_param galaxy_name="organism" remote_name="organism" missing="" />
|
|
|
19 <request_param galaxy_name="table" remote_name="table" missing="" />
|
|
|
20 <request_param galaxy_name="description" remote_name="description" missing="" />
|
|
|
21 <request_param galaxy_name="name" remote_name="name" missing="Ratmine query" />
|
|
|
22 <request_param galaxy_name="info" remote_name="info" missing="" />
|
|
|
23 <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" >
|
|
|
24 <value_translation>
|
|
|
25 <value galaxy_value="auto" remote_value="txt" /> <!-- intermine currently always provides 'txt', make this auto detect -->
|
|
|
26 </value_translation>
|
|
|
27 </request_param>
|
|
|
28 </request_param_translation>
|
|
|
29 <uihints minwidth="800"/>
|
|
|
30 <outputs>
|
|
|
31 <data name="output" format="txt" />
|
|
|
32 </outputs>
|
|
|
33 <options sanitize="False" refresh="True"/>
|
|
|
34 </tool>
|
