|
0
|
1 <tool id="EMBOSS: dottup26" name="dottup" version="5.0.0">
|
|
|
2 <description>Displays a wordmatch dotplot of two sequences</description>
|
|
|
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
|
|
|
4 <command interpreter="perl">emboss_single_outputfile_wrapper.pl dottup -asequence $input1 -bsequence $input2 -goutfile $out_file1 -wordsize $wordsize -boxit $boxit -graph png -xygraph png -auto</command>
|
|
|
5 <inputs>
|
|
|
6 <param format="data" name="input1" type="data">
|
|
|
7 <label>Sequence 1</label>
|
|
|
8 </param>
|
|
|
9 <param format="data" name="input2" type="data">
|
|
|
10 <label>Sequence 2</label>
|
|
|
11 </param>
|
|
|
12 <param name="wordsize" size="4" type="text" value="4">
|
|
|
13 <label>Word size</label>
|
|
|
14 </param>
|
|
|
15 <param name="boxit" type="select">
|
|
|
16 <label>Draw a box around dotplot</label>
|
|
|
17 <option value="yes">Yes</option>
|
|
|
18 <option value="no">No</option>
|
|
|
19 </param>
|
|
|
20 </inputs>
|
|
|
21 <outputs>
|
|
|
22 <data format="png" name="out_file1" />
|
|
|
23 </outputs>
|
|
|
24 <!-- functional tests not possible since image output contains file name information and timestamp -->
|
|
|
25 <help>
|
|
|
26 You can view the original documentation here_.
|
|
|
27
|
|
|
28 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dottup.html
|
|
|
29 </help>
|
|
|
30 </tool> |
