|
0
|
1 <tool id="mergeCols1" name="Merge Columns" version="1.0.1">
|
|
|
2 <description>together</description>
|
|
|
3 <command interpreter="python">
|
|
|
4 mergeCols.py
|
|
|
5 $input1
|
|
|
6 $out_file1
|
|
|
7 $col1
|
|
|
8 $col2
|
|
|
9 #for $col in $columns
|
|
|
10 ${col.datacol}
|
|
|
11 #end for
|
|
|
12 </command>
|
|
|
13 <inputs>
|
|
|
14 <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/>
|
|
|
15 <param name="col1" label="Merge column" type="data_column" data_ref="input1" />
|
|
|
16 <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/>
|
|
|
17 <repeat name="columns" title="Columns">
|
|
|
18 <param name="datacol" label="Add column" type="data_column" data_ref="input1" />
|
|
|
19 </repeat>
|
|
|
20 </inputs>
|
|
|
21 <outputs>
|
|
|
22 <data format="tabular" name="out_file1" />
|
|
|
23 </outputs>
|
|
|
24 <tests>
|
|
|
25 <test>
|
|
|
26 <param name="input1" value="1.bed"/>
|
|
|
27 <param name="col1" value="4" />
|
|
|
28 <param name="col2" value="1" />
|
|
|
29 <param name="datacol" value="6" />
|
|
|
30 <output name="out_file1" file="mergeCols.dat"/>
|
|
|
31 </test>
|
|
|
32 </tests>
|
|
|
33 <help>
|
|
|
34
|
|
|
35 .. class:: infomark
|
|
|
36
|
|
|
37 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
|
|
|
38
|
|
|
39 -----
|
|
|
40
|
|
|
41 **What it does**
|
|
|
42
|
|
|
43 This tool merges columns together. Any number of valid columns can be merged in any order.
|
|
|
44
|
|
|
45 -----
|
|
|
46
|
|
|
47 **Example**
|
|
|
48
|
|
|
49 Input dataset (five columns: c1, c2, c3, c4, and c5)::
|
|
|
50
|
|
|
51 1 10 1000 gene1 chr
|
|
|
52 2 100 1500 gene2 chr
|
|
|
53
|
|
|
54 merging columns "**c5,c1**" will return::
|
|
|
55
|
|
|
56 1 10 1000 gene1 chr chr1
|
|
|
57 2 100 1500 gene2 chr chr2
|
|
|
58
|
|
|
59 .. class:: warningmark
|
|
|
60
|
|
|
61 Note that all original columns are preserved and the result of merge is added as the rightmost column.
|
|
|
62 </help>
|
|
|
63 </tool>
|
