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1 <tool id="abyss" name="ABySS" version="1.0.0">
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2 <description>Short-read de Bruijn assembly</description>
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3 <command interpreter="python">
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4 quake_wrapper.py -k $k -r $input1 -p 8 > $output1
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5 </command>
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6 <inputs>
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7 <param name="input1" format="fastq" type="data" label="Select FASTQ file to correct" />
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8 <param name="k" type="integer" value="16" label="Size of k-mers to correct" />
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9 </inputs>
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10 <outputs>
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11 <data format="fastq" name="output1" label="Error-corrected reads from ${on_string}" />
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12 </outputs>
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13 <help>
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14
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15 **What it does**
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16
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17 TBD. Calls ABySS assembler
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18
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19 **Parameter list**
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20
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21 k
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22
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23 **Output**
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24
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25 Corrected reads
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26
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27 </help>
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28 </tool>
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29
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30
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