Mercurial > repos > xuebing > sharplabtool
comparison mytools/collapseBed.xml @ 9:87eb5c5ddfe9
Uploaded
| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 20:01:43 -0500 |
| parents | f0dc65e7f6c0 |
| children |
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| 8:361ec1c0479d | 9:87eb5c5ddfe9 |
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| 1 <tool id="collapseBed" name="collapse"> | |
| 2 <description>intervals</description> | |
| 3 <command interpreter="python">collapseBed2.py $input $strand $score > $outfile </command> | |
| 4 <inputs> | |
| 5 <param name="input" format="interval" type="data" label="Original file"/> | |
| 6 <param name="strand" size="10" type="integer" value="6" label="strand column" help="set 0 to ignore strand information" /> | |
| 7 <param name="score" size="10" type="integer" value="5" label="for duplicate lines, keep the one with max value in column" help="set 0 to ignore score information" /> | |
| 8 </inputs> | |
| 9 <outputs> | |
| 10 <data format="input" name="outfile" /> | |
| 11 </outputs> | |
| 12 <help> | |
| 13 | |
| 14 **What it does** | |
| 15 | |
| 16 This tool collapses genomic intervals that have the same position (and strandness if specified) and output a set of unique intervals. | |
| 17 | |
| 18 </help> | |
| 19 </tool> |