Mercurial > repos > xuebing > sharplabtool
comparison tools/data_source/epigraph_import.xml @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| children |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <?xml version="1.0"?> | |
| 2 <!-- | |
| 3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in | |
| 4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the | |
| 5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. | |
| 6 --> | |
| 7 <tool name="EpiGRAPH" id="epigraph_import" tool_type="data_source"> | |
| 8 <description> server</description> | |
| 9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> | |
| 10 <inputs action="http://epigraph.mpi-inf.mpg.de/WebGRAPH/faces/Login.jsp" check_values="false" method="get"> | |
| 11 <display>go to EpiGRAPH server $GALAXY_URL</display> | |
| 12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=epigraph_import" /> | |
| 13 </inputs> | |
| 14 <request_param_translation> | |
| 15 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> | |
| 16 <request_param galaxy_name="URL" remote_name="URL" missing="" /> | |
| 17 <request_param galaxy_name="dbkey" remote_name="GENOME" missing="?" /> | |
| 18 <request_param galaxy_name="organism" remote_name="organism" missing="" /> | |
| 19 <request_param galaxy_name="table" remote_name="table" missing="" /> | |
| 20 <request_param galaxy_name="description" remote_name="description" missing="" /> | |
| 21 <request_param galaxy_name="name" remote_name="NAME" missing="EpiGRAPH query" /> | |
| 22 <request_param galaxy_name="info" remote_name="INFO" missing="" /> | |
| 23 <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" /> | |
| 24 </request_param_translation> | |
| 25 <uihints minwidth="800"/> | |
| 26 <outputs> | |
| 27 <data name="output" format="txt" /> | |
| 28 </outputs> | |
| 29 <options sanitize="False" refresh="True"/> | |
| 30 </tool> |