comparison tools/data_source/ucsc_tablebrowser_archaea.xml @ 0:9071e359b9a3

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author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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1 <?xml version="1.0"?>
2 <!--
3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
6 -->
7 <tool name="UCSC Archaea" id="ucsc_table_direct_archaea1" tool_type="data_source">
8 <description>table browser</description>
9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
10 <inputs action="http://archaea.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
11 <display>go to UCSC Table Browser $GALAXY_URL</display>
12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
13 <param name="tool_id" type="hidden" value="ucsc_table_direct_archaea1" />
14 <param name="sendToGalaxy" type="hidden" value="1" />
15 <param name="hgta_compressType" type="hidden" value="none" />
16 <param name="hgta_outputType" type="hidden" value="bed" />
17 </inputs>
18 <request_param_translation>
19 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
20 <request_param galaxy_name="URL" remote_name="URL" missing="" />
21 <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
22 <request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
23 <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
24 <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
25 <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="auto" >
26 <value_translation>
27 <value galaxy_value="auto" remote_value="primaryTable" />
28 <value galaxy_value="auto" remote_value="selectedFields" />
29 <value galaxy_value="wig" remote_value="wigData" />
30 <value galaxy_value="interval" remote_value="tab" />
31 <value galaxy_value="html" remote_value="hyperlinks" />
32 <value galaxy_value="fasta" remote_value="sequence" />
33 <value galaxy_value="gtf" remote_value="gff" />
34 </value_translation>
35 </request_param>
36 </request_param_translation>
37 <uihints minwidth="800"/>
38 <outputs>
39 <data name="output" format="tabular" label="${tool.name} on ${organism}: ${table} (#if $description == 'range' then $getVar( 'position', 'unknown position' ) else $description#)"/>
40 </outputs>
41 <options sanitize="False" refresh="True"/>
42 </tool>