Mercurial > repos > xuebing > sharplabtool
comparison tools/data_source/ucsc_tablebrowser_test.xml @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| children |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <?xml version="1.0"?> | |
| 2 <!-- | |
| 3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in | |
| 4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the | |
| 5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. | |
| 6 --> | |
| 7 <tool name="UCSC Test" id="ucsc_table_direct_test1" tool_type="data_source"> | |
| 8 <description>table browser</description> | |
| 9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> | |
| 10 <inputs action="http://genome-test.cse.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get"> | |
| 11 <display>go to UCSC Table Browser $GALAXY_URL</display> | |
| 12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> | |
| 13 <param name="tool_id" type="hidden" value="ucsc_table_direct_test1" /> | |
| 14 <param name="sendToGalaxy" type="hidden" value="1" /> | |
| 15 <param name="hgta_compressType" type="hidden" value="none" /> | |
| 16 <param name="hgta_outputType" type="hidden" value="bed" /> | |
| 17 </inputs> | |
| 18 <request_param_translation> | |
| 19 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> | |
| 20 <request_param galaxy_name="URL" remote_name="URL" missing="" /> | |
| 21 <request_param galaxy_name="dbkey" remote_name="db" missing="?" /> | |
| 22 <request_param galaxy_name="organism" remote_name="org" missing="unknown species" /> | |
| 23 <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" /> | |
| 24 <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" /> | |
| 25 <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="auto" > | |
| 26 <value_translation> | |
| 27 <value galaxy_value="auto" remote_value="primaryTable" /> | |
| 28 <value galaxy_value="auto" remote_value="selectedFields" /> | |
| 29 <value galaxy_value="wig" remote_value="wigData" /> | |
| 30 <value galaxy_value="interval" remote_value="tab" /> | |
| 31 <value galaxy_value="html" remote_value="hyperlinks" /> | |
| 32 <value galaxy_value="fasta" remote_value="sequence" /> | |
| 33 <value galaxy_value="gtf" remote_value="gff" /> | |
| 34 </value_translation> | |
| 35 </request_param> | |
| 36 </request_param_translation> | |
| 37 <uihints minwidth="800"/> | |
| 38 <outputs> | |
| 39 <data name="output" format="tabular" label="${tool.name} on ${organism}: ${table} (#if $description == 'range' then $getVar( 'position', 'unknown position' ) else $description#)"/> | |
| 40 </outputs> | |
| 41 <options sanitize="False" refresh="True"/> | |
| 42 </tool> |