Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_cai_custom.xml @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="EMBOSS: cai_custom6" name="cai custom" version="5.0.0"> | |
| 2 <description>CAI codon adaptation index using custom codon usage file</description> | |
| 3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
| 4 <command>cai -seqall $input1 -outfile $out_file1 -cfile $input2 -auto</command> | |
| 5 <inputs> | |
| 6 <param format="fasta" name="input1" type="data"> | |
| 7 <label>On query</label> | |
| 8 </param> | |
| 9 <param format="txt" name="input2" type="data"> | |
| 10 <label>Codon Usage File</label> | |
| 11 </param> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data format="txt" name="out_file1" /> | |
| 15 </outputs> | |
| 16 <help> | |
| 17 .. class:: warningmark | |
| 18 | |
| 19 The input dataset needs to be sequences. | |
| 20 | |
| 21 ----- | |
| 22 | |
| 23 You can view the original documentation here_. | |
| 24 | |
| 25 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cai_custom.html | |
| 26 </help> | |
| 27 </tool> |