Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_chips.xml @ 0:9071e359b9a3
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| author | xuebing |
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| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="EMBOSS: chips10" name="chips" version="5.0.0"> | |
| 2 <description>Codon usage statistics</description> | |
| 3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
| 4 <command>chips -seqall $input1 -outfile $out_file1 -sum $sum -auto</command> | |
| 5 <inputs> | |
| 6 <param format="data" name="input1" type="data"> | |
| 7 <label>On query</label> | |
| 8 </param> | |
| 9 <param name="sum" type="select"> | |
| 10 <label>Sum codons over all sequences</label> | |
| 11 <option value="yes">Yes</option> | |
| 12 <option value="no">No</option> | |
| 13 </param> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="chips" name="out_file1" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input1" value="2.fasta"/> | |
| 21 <param name="sum" value="yes"/> | |
| 22 <output name="out_file1" file="emboss_chips_out.chips"/> | |
| 23 </test> | |
| 24 </tests> | |
| 25 <help> | |
| 26 You can view the original documentation here_. | |
| 27 | |
| 28 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/chips.html | |
| 29 </help> | |
| 30 </tool> |