Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_cpgplot.xml @ 0:9071e359b9a3
Uploaded
| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:9071e359b9a3 |
|---|---|
| 1 <tool id="EMBOSS: cpgplot15" name="cpgplot" version="5.0.0"> | |
| 2 <description>Plot CpG rich areas</description> | |
| 3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
| 4 <command interpreter="perl">emboss_cpgplot_wrapper.pl cpgplot -sequence $input1 -window $window -minlen $minlen -minpc $minpc -outfile $outfile -graph png -goutfile $goutfile -outfeat $outfeat -minoe $minoe -auto</command> | |
| 5 <inputs> | |
| 6 <param format="data" name="input1" type="data"> | |
| 7 <label>On query</label> | |
| 8 </param> | |
| 9 <param name="window" size="4" type="integer" value="100"> | |
| 10 <label>Window Size</label> | |
| 11 </param> | |
| 12 <param name="minlen" size="4" type="integer" value="200"> | |
| 13 <label>Minimum length</label> | |
| 14 </param> | |
| 15 <param name="minoe" size="4" type="float" value="0.6"> | |
| 16 <label>Minimum average observed to expected ratio</label> | |
| 17 </param> | |
| 18 <param name="minpc" size="4" type="float" value="50.0"> | |
| 19 <label>Minimum average percentage of G plus C</label> | |
| 20 </param> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data format="cpgplot" name="outfile" /> | |
| 24 <data format="png" name="goutfile" /> | |
| 25 <data format="gff" name="outfeat" /> | |
| 26 </outputs> | |
| 27 <code file="emboss_format_corrector.py" /> | |
| 28 <help> | |
| 29 You can view the original documentation here_. | |
| 30 | |
| 31 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cpgplot.html | |
| 32 </help> | |
| 33 </tool> |