Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_dreg.xml @ 0:9071e359b9a3
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| author | xuebing |
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| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="EMBOSS: dreg27" name="dreg" version="5.0.0"> | |
| 2 <description>Regular expression search of a nucleotide sequence</description> | |
| 3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
| 4 <command>dreg -sequence $input1 -outfile $out_file1 -pattern "$pattern" -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command> | |
| 5 <inputs> | |
| 6 <param format="data" name="input1" type="data"> | |
| 7 <label>Sequence 1</label> | |
| 8 </param> | |
| 9 <param name="pattern" size="50" type="text" value="(AUG)"> | |
| 10 <label>Regular expression pattern</label> | |
| 11 </param> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data format="dreg" name="out_file1" /> | |
| 15 </outputs> | |
| 16 <!-- tests not possible since dreg timestamps output file --> | |
| 17 <help> | |
| 18 You can view the original documentation here_. | |
| 19 | |
| 20 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dreg.html | |
| 21 </help> | |
| 22 </tool> |