comparison tools/emboss_5/emboss_octanol.xml @ 0:9071e359b9a3

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author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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1 <tool id="EMBOSS: octanol63" name="octanol" version="5.0.0">
2 <!-- graphics output with filename, no functional tests added -->
3 <description>Displays protein hydropathy</description>
4 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
5 <command interpreter="perl">emboss_single_outputfile_wrapper.pl octanol -sequence $input1 -graph png -goutfile $out_file1 -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot
6 -differenceplot $differenceplot -auto</command>
7 <inputs>
8 <param format="data" name="input1" type="data">
9 <label>Sequences</label>
10 </param>
11 <param name="width" size="4" type="text" value="19">
12 <label>Window size</label>
13 </param>
14 <param name="octanolplot" type="select">
15 <label>Display the octanol plot</label>
16 <option value="no">No</option>
17 <option value="yes">Yes</option>
18 </param>
19 <param name="interfaceplot" type="select">
20 <label>Display the interface plot</label>
21 <option value="no">No</option>
22 <option value="yes">Yes</option>
23 </param>
24 <param name="differenceplot" type="select">
25 <label>Display the difference plot</label>
26 <option value="yes">Yes</option>
27 <option value="no">No</option>
28 </param>
29 </inputs>
30 <outputs>
31 <data format="png" name="out_file1" />
32 </outputs>
33 <help>
34 You can view the original documentation here_.
35
36 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/octanol.html
37 </help>
38 </tool>