Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_octanol.xml @ 0:9071e359b9a3
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| author | xuebing |
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| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="EMBOSS: octanol63" name="octanol" version="5.0.0"> | |
| 2 <!-- graphics output with filename, no functional tests added --> | |
| 3 <description>Displays protein hydropathy</description> | |
| 4 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
| 5 <command interpreter="perl">emboss_single_outputfile_wrapper.pl octanol -sequence $input1 -graph png -goutfile $out_file1 -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot | |
| 6 -differenceplot $differenceplot -auto</command> | |
| 7 <inputs> | |
| 8 <param format="data" name="input1" type="data"> | |
| 9 <label>Sequences</label> | |
| 10 </param> | |
| 11 <param name="width" size="4" type="text" value="19"> | |
| 12 <label>Window size</label> | |
| 13 </param> | |
| 14 <param name="octanolplot" type="select"> | |
| 15 <label>Display the octanol plot</label> | |
| 16 <option value="no">No</option> | |
| 17 <option value="yes">Yes</option> | |
| 18 </param> | |
| 19 <param name="interfaceplot" type="select"> | |
| 20 <label>Display the interface plot</label> | |
| 21 <option value="no">No</option> | |
| 22 <option value="yes">Yes</option> | |
| 23 </param> | |
| 24 <param name="differenceplot" type="select"> | |
| 25 <label>Display the difference plot</label> | |
| 26 <option value="yes">Yes</option> | |
| 27 <option value="no">No</option> | |
| 28 </param> | |
| 29 </inputs> | |
| 30 <outputs> | |
| 31 <data format="png" name="out_file1" /> | |
| 32 </outputs> | |
| 33 <help> | |
| 34 You can view the original documentation here_. | |
| 35 | |
| 36 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/octanol.html | |
| 37 </help> | |
| 38 </tool> |