comparison tools/emboss_5/emboss_preg.xml @ 0:9071e359b9a3

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author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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1 <tool id="EMBOSS: preg78" name="preg" version="5.0.0">
2 <description>Regular expression search of a protein sequence</description>
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4 <command>preg -sequence $input1 -outfile $out_file1 -pattern "$pattern" -auto</command>
5 <inputs>
6 <param format="data" name="input1" type="data">
7 <label>Sequence 1</label>
8 </param>
9 <param name="pattern" size="50" type="text" value="(ACD)">
10 <label>Regular expression pattern</label>
11 </param>
12 </inputs>
13 <outputs>
14 <data format="preg" name="out_file1" />
15 </outputs>
16 <help>
17 You can view the original documentation here_.
18
19 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/preg.html
20 </help>
21 </tool>