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comparison tools/emboss_5/emboss_tmap.xml @ 0:9071e359b9a3

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author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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1 <tool id="EMBOSS: tmap99" name="tmap" version="5.0.0">
2 <description>Displays membrane spanning regions</description>
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4 <command interpreter="perl">emboss_single_outputfile_wrapper.pl tmap -sequences $input1 -outfile $out_file1 -goutfile $out_file2 -graph png -rformat $out_format1 -auto</command>
5 <inputs>
6 <param format="data" name="input1" type="data">
7 <label>Sequence</label>
8 </param>
9 <param name="out_format1" type="select">
10 <label>Output Report File Format</label>
11 <option value="seqtable ">SeqTable</option>
12 <option value="embl">EMBL</option>
13 <option value="genbank">GENBANK</option>
14 <option value="gff">GFF</option>
15 <option value="pir">PIR</option>
16 <option value="swiss">SwissProt</option>
17 <option value="dbmotif">DbMotif</option>
18 <option value="diffseq">Diffseq</option>
19 <option value="excel">Excel (tab delimited)</option>
20 <option value="feattable">FeatTable</option>
21 <option value="motif">Motif</option>
22 <option value="regions">Regions</option>
23 <option value="simple">SRS Simple</option>
24 <option value="srs">SRS</option>
25 <option value="table">Table</option>
26 <option value="tagseq">TagSeq</option>
27 </param>
28 </inputs>
29 <outputs>
30 <data format="seqtable" name="out_file1" />
31 <data format="png" name="out_file2" />
32 </outputs>
33 <code file="emboss_format_corrector.py" />
34 <help>
35 You can view the original documentation here_.
36
37 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/tmap.html
38 </help>
39 </tool>