Mercurial > repos > xuebing > sharplabtool
comparison tools/filters/catWrapper.py @ 0:9071e359b9a3
Uploaded
| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:9071e359b9a3 |
|---|---|
| 1 #!/usr/bin/env python | |
| 2 #By, Guruprasad Ananda. | |
| 3 | |
| 4 from galaxy import eggs | |
| 5 import sys, os | |
| 6 | |
| 7 def stop_err(msg): | |
| 8 sys.stderr.write(msg) | |
| 9 sys.exit() | |
| 10 | |
| 11 def main(): | |
| 12 outfile = sys.argv[1] | |
| 13 infile = sys.argv[2] | |
| 14 | |
| 15 try: | |
| 16 fout = open(sys.argv[1],'w') | |
| 17 except: | |
| 18 stop_err("Output file cannot be opened for writing.") | |
| 19 | |
| 20 try: | |
| 21 fin = open(sys.argv[2],'r') | |
| 22 except: | |
| 23 stop_err("Input file cannot be opened for reading.") | |
| 24 | |
| 25 if len(sys.argv) < 4: | |
| 26 os.system("cp %s %s" %(infile,outfile)) | |
| 27 sys.exit() | |
| 28 | |
| 29 cmdline = "cat %s " %(infile) | |
| 30 for inp in sys.argv[3:]: | |
| 31 cmdline = cmdline + inp + " " | |
| 32 cmdline = cmdline + ">" + outfile | |
| 33 try: | |
| 34 os.system(cmdline) | |
| 35 except: | |
| 36 stop_err("Error encountered with cat.") | |
| 37 | |
| 38 if __name__ == "__main__": main() |