Mercurial > repos > xuebing > sharplabtool
comparison tools/filters/joiner2.xml @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="joiner2" name="Relational join 2"> | |
| 2 <description>two datasets a specific column of which has the same value</description> | |
| 3 <command>sort -k $col1 $input1 > $input1.tmp; sort -k $col2 $input2 > $input2.tmp; join -1 $col1 -2 $col2 $input1.tmp $input2.tmp | tr " " "\t" > $out_file1; rm -rf $input1.tmp $input2.tmp </command> | |
| 4 <inputs> | |
| 5 <param name="input1" label="Combine dataset" format="tabular" type="data" /> | |
| 6 <param name="col1" label="using column" type="data_column" data_ref="input1" /> | |
| 7 <param name="input2" label="with dataset" format="tabular" type="data"/> | |
| 8 <param name="col2" label="and column" type="data_column" data_ref="input2" /> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data format="input" name="out_file1" metadata_source="input1" /> | |
| 12 </outputs> | |
| 13 </tool> |