Mercurial > repos > xuebing > sharplabtool
comparison tools/mytools/memelogo.xml @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="memelogo" name="motif logo"> | |
| 2 <description>of MEME motif</description> | |
| 3 <command>ceqlogo -i $input -o tmp.eps -t $title -x '' | |
| 4 && ps2pdf -dEPSCrop tmp.eps $output | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input" type="data" format="txt" label="MEME motif file"/> | |
| 8 <param name="title" type='text' size="50" label="Title" value="motif1"/> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data format="pdf" name="output" /> | |
| 12 </outputs> | |
| 13 <help> | |
| 14 | |
| 15 **Description** | |
| 16 | |
| 17 Generate sequence logo for MEME motif file. See details here: | |
| 18 | |
| 19 http://meme.sdsc.edu/meme/doc/ceqlogo.html | |
| 20 | |
| 21 **Example output** | |
| 22 | |
| 23 .. image:: ./static/images/memelogo.png | |
| 24 | |
| 25 </help> | |
| 26 </tool> |