Mercurial > repos > xuebing > sharplabtool
comparison tools/rgenetics/rgLDIndep_code.py @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 from galaxy import app | |
| 2 import os, string, time | |
| 3 | |
| 4 def timenow(): | |
| 5 """return current time as a string | |
| 6 """ | |
| 7 return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time())) | |
| 8 | |
| 9 | |
| 10 | |
| 11 def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr): | |
| 12 name,data = out_data.items()[0] | |
| 13 basename = param_dict['title1'] | |
| 14 killme = string.punctuation + string.whitespace | |
| 15 trantab = string.maketrans(killme,'_'*len(killme)) | |
| 16 title = basename.encode().translate(trantab) | |
| 17 info = '%s filtered by rgLDIndep.py at %s' % (title,timenow()) | |
| 18 data.file_name = data.file_name | |
| 19 data.metadata.base_name = title | |
| 20 data.name = '%s.pbed' % title | |
| 21 data.info = info | |
| 22 app.model.context.flush() | |
| 23 | |
| 24 | |
| 25 |