Mercurial > repos > xuebing > sharplabtool
comparison tools/unix_tools/join_tool.xml @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="cshl_join_tool" name="join"> | |
| 2 <description>two files</description> | |
| 3 <command interpreter="sh">join_tool.sh "$jointype" "$output_format" | |
| 4 "$empty_string_filler" "$delimiter" | |
| 5 "$ignore_case" | |
| 6 "$input1" "$column1" | |
| 7 "$input2" "$column2" | |
| 8 "$output" | |
| 9 </command> | |
| 10 | |
| 11 <inputs> | |
| 12 <param format="txt" name="input1" type="data" label="1st file" /> | |
| 13 <param name="column1" label="Column to use from 1st file" type="data_column" data_ref="input1" accept_default="true" /> | |
| 14 | |
| 15 <param format="txt" name="input2" type="data" label="2nd File" /> | |
| 16 <param name="column2" label="Column to use from 2nd file" type="data_column" data_ref="input2" accept_default="true" /> | |
| 17 | |
| 18 <param name="jointype" type="select" label="Output lines appearing in"> | |
| 19 <option value=" ">BOTH 1st & 2nd file.</option> | |
| 20 <option value="-v 1">1st but not in 2nd file. [-v 1]</option> | |
| 21 <option value="-v 2">2nd but not in 1st file. [-v 2]</option> | |
| 22 <option value="-a 1">both 1st & 2nd file, plus unpairable lines from 1st file. [-a 1]</option> | |
| 23 <option value="-a 2">both 1st & 2nd file, plus unpairable lines from 2st file. [-a 2]</option> | |
| 24 <option value="-a 1 -a 2">All Lines [-a 1 -a 2]</option> | |
| 25 </param> | |
| 26 | |
| 27 <param name="delimiter" type="select" label="field-separator [-t]"> | |
| 28 <option value=",">comma (,)</option> | |
| 29 <option value=":">colons (:) </option> | |
| 30 <option value=" ">single space</option> | |
| 31 <option value=".">dot (.)</option> | |
| 32 <option value="-">dash (-)</option> | |
| 33 <option value="|">pipe (|)</option> | |
| 34 <option value="_">underscore (_)</option> | |
| 35 <option selected="True" value="tab">tab</option> | |
| 36 </param> | |
| 37 | |
| 38 <param name="ignore_case" type="select" label="Case sensitivity"> | |
| 39 <option value="">Case sensitive</option> | |
| 40 <option value="-i">Case INsensitive [-i]</option> | |
| 41 </param> | |
| 42 | |
| 43 <param name="empty_string_filler" type="text" size="20" label="String replacement for empty fields [-e EMPTY]" help="Leave empty unless you know what you're doing. Use this when specifing output format" /> | |
| 44 | |
| 45 <param name="output_format" type="text" size="30" label="Output line format [-o FORMAT]" help="Leave empty unless you know what you're doing. Example: 1.1,2.1,2.1" /> | |
| 46 | |
| 47 </inputs> | |
| 48 <outputs> | |
| 49 <data name="output" format="input" metadata_source="input1" /> | |
| 50 </outputs> | |
| 51 | |
| 52 <help> | |
| 53 </help> | |
| 54 </tool> |