comparison StartGenometriCorr.xml @ 11:b7f1d9f8f3bc

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author xuebing
date Sat, 10 Mar 2012 07:59:27 -0500
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10:1558594a3c2e 11:b7f1d9f8f3bc
1 <tool id="genometric_correlation" name="Genometric Correlation">
2 <description>between two files of genomic intervals</description>
3 <command interpreter="Rscript --vanilla">
4 Start_GenometriCorr.R $config $query $reference $output_options $output
5 </command>
6 <inputs>
7 <param format="text" name="config" type="data" label="Configuration file"/>
8 <param format="text" name="query" type="data" label="Query intervals file"/>
9 <param format="text" name="reference" type="data" label="Reference intervals file"/>
10 <param name="output_options" type="select" label="Type of output">
11 <option value="plot">ECDF plots</option>
12 <option value="vis">Graphic visualization</option>
13 <option value="stats">Text output of statistics</option>
14 <option value="plot_vis">All</option>
15 </param>
16 </inputs>
17 <outputs>
18 <data name="output" format="pdf"/>
19 </outputs>
20 <help>
21 This tool determines the statistical relationship (if any) between two sets of genomic intervals. Output can be text only, plot (ECDF curves), or a more colorful graphic.
22 </help>
23 </tool>