Mercurial > repos > xuebing > sharplabtool
comparison fastqdump.xml @ 11:b7f1d9f8f3bc
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author | xuebing |
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date | Sat, 10 Mar 2012 07:59:27 -0500 |
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10:1558594a3c2e | 11:b7f1d9f8f3bc |
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1 <tool id="fastqdump" name="fastq-dump"> | |
2 <description>convert SRA to FASTQ</description> | |
3 <command>/Users/xuebing/tools/sratoolkit.2.1.9-mac32/fastq-dump -A $input -M $minReadLen -Z > $out_file1 </command> | |
4 <inputs> | |
5 <param name="input" format="sra" type="data" label="Original file (SRA)"/> | |
6 <param name="minReadLen" size="10" type="integer" value="10" label="minimum read length to output"/> | |
7 </inputs> | |
8 <outputs> | |
9 <data format="fastq" name="out_file1" /> | |
10 </outputs> | |
11 <help> | |
12 | |
13 **What it does** | |
14 | |
15 This is a wrapper of the fastq-dump tool from sra-toolkit. See http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software | |
16 | |
17 </help> | |
18 </tool> |