Mercurial > repos > xuebing > sharplabtool
comparison mytools/StartGenometriCorr.xml @ 7:f0dc65e7f6c0
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:59:07 -0500 |
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| 6:094f377db4e5 | 7:f0dc65e7f6c0 |
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| 1 <tool id="genometric_correlation" name="Genometric Correlation"> | |
| 2 <description>between two files of genomic intervals</description> | |
| 3 <command interpreter="Rscript --vanilla"> | |
| 4 Start_GenometriCorr.R $config $query $reference $output_options $output | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param format="text" name="config" type="data" label="Configuration file"/> | |
| 8 <param format="text" name="query" type="data" label="Query intervals file"/> | |
| 9 <param format="text" name="reference" type="data" label="Reference intervals file"/> | |
| 10 <param name="output_options" type="select" label="Type of output"> | |
| 11 <option value="plot">ECDF plots</option> | |
| 12 <option value="vis">Graphic visualization</option> | |
| 13 <option value="stats">Text output of statistics</option> | |
| 14 <option value="plot_vis">All</option> | |
| 15 </param> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="output" format="pdf"/> | |
| 19 </outputs> | |
| 20 <help> | |
| 21 This tool determines the statistical relationship (if any) between two sets of genomic intervals. Output can be text only, plot (ECDF curves), or a more colorful graphic. | |
| 22 </help> | |
| 23 </tool> |