Mercurial > repos > xuebing > sharplabtool
comparison mytools/convertEnsembl.xml @ 7:f0dc65e7f6c0
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:59:07 -0500 |
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| 6:094f377db4e5 | 7:f0dc65e7f6c0 |
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| 1 <tool id="convertens" name="convert ensembl"> | |
| 2 <description>to ucsc</description> | |
| 3 <command interpreter="python">convertEnsembl.py $input $output $skip </command> | |
| 4 <inputs> | |
| 5 <param name="input" format="interval" type="data" label="Original file"/> | |
| 6 <param name="skip" size="10" type="integer" value="0" label="Number of beginning lines to skip"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="input" name="output" /> | |
| 10 </outputs> | |
| 11 <help> | |
| 12 | |
| 13 **What it does** | |
| 14 | |
| 15 This tool convert ensembl based interval file to ucsc format: add 'chr' to chromosome number (column 1), and replace '1' and '-1' with '+' and '-' in column 6, respectively. | |
| 16 | |
| 17 </help> | |
| 18 </tool> |