Mercurial > repos > xuebing > sharplabtool
comparison mytools/fastashuffle1.xml @ 7:f0dc65e7f6c0
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author | xuebing |
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date | Fri, 09 Mar 2012 19:59:07 -0500 |
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6:094f377db4e5 | 7:f0dc65e7f6c0 |
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1 <tool id="seqshuffle" name="shuffle sequences"> | |
2 <description>preserving mono-nucleotide frequency</description> | |
3 <command>cat $input | fasta-shuffle-letters > $output </command> | |
4 <inputs> | |
5 <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/> | |
6 </inputs> | |
7 <outputs> | |
8 <data format="fasta" name="output" /> | |
9 </outputs> | |
10 <help> | |
11 | |
12 **Description** | |
13 | |
14 shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency. | |
15 | |
16 </help> | |
17 </tool> |