comparison mytools/fastashuffle1.xml @ 7:f0dc65e7f6c0

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author xuebing
date Fri, 09 Mar 2012 19:59:07 -0500
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6:094f377db4e5 7:f0dc65e7f6c0
1 <tool id="seqshuffle" name="shuffle sequences">
2 <description>preserving mono-nucleotide frequency</description>
3 <command>cat $input | fasta-shuffle-letters > $output </command>
4 <inputs>
5 <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/>
6 </inputs>
7 <outputs>
8 <data format="fasta" name="output" />
9 </outputs>
10 <help>
11
12 **Description**
13
14 shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency.
15
16 </help>
17 </tool>