Mercurial > repos > xuebing > sharplabtool
comparison mytools/memelogo.xml @ 7:f0dc65e7f6c0
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author | xuebing |
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date | Fri, 09 Mar 2012 19:59:07 -0500 |
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6:094f377db4e5 | 7:f0dc65e7f6c0 |
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1 <tool id="memelogo" name="motif logo"> | |
2 <description>of MEME motif</description> | |
3 <command>ceqlogo -i $input -o tmp.eps -t $title -x '' | |
4 && ps2pdf -dEPSCrop tmp.eps $output | |
5 </command> | |
6 <inputs> | |
7 <param name="input" type="data" format="txt" label="MEME motif file"/> | |
8 <param name="title" type='text' size="50" label="Title" value="motif1"/> | |
9 </inputs> | |
10 <outputs> | |
11 <data format="pdf" name="output" /> | |
12 </outputs> | |
13 <help> | |
14 | |
15 **Description** | |
16 | |
17 Generate sequence logo for MEME motif file. See details here: | |
18 | |
19 http://meme.sdsc.edu/meme/doc/ceqlogo.html | |
20 | |
21 **Example output** | |
22 | |
23 .. image:: ./static/images/memelogo.png | |
24 | |
25 </help> | |
26 </tool> |