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comparison fastamarkov.xml @ 14:76e1b1b21cce default tip

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author xuebing
date Tue, 13 Mar 2012 19:05:10 -0400
parents 292186c14b08
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13:292186c14b08 14:76e1b1b21cce
1 <tool id="fastamarkov" name="background model">
2 <description>of DNA sequence</description>
3 <command>cat $input | fasta-get-markov -m $m $norc > $output 2> err.txt
4
5 </command>
6 <inputs>
7 <param name="input" type="data" format="fasta" label="Sequence file (FASTA)"/>
8 <param name="m" size="10" type="integer" value="0" label="Order of Markov model to use"/>
9 <param name="norc" label="Combine forward and reverse complement frequencies" type="boolean" truevalue="" falsevalue="-norc" checked="True"/>
10 </inputs>
11 <outputs>
12 <data format="txt" name="output" />
13 </outputs>
14 <help>
15
16 **What it does**
17
18 This tool generates a markov model from a fasta sequence file.
19
20 </help>
21 </tool>