comparison fastqdump.xml @ 14:76e1b1b21cce default tip

Deleted selected files
author xuebing
date Tue, 13 Mar 2012 19:05:10 -0400
parents 292186c14b08
children
comparison
equal deleted inserted replaced
13:292186c14b08 14:76e1b1b21cce
1 <tool id="fastqdump" name="fastq-dump">
2 <description>convert SRA to FASTQ</description>
3 <command>/Users/xuebing/tools/sratoolkit.2.1.9-mac32/fastq-dump -A $input -M $minReadLen -Z > $out_file1 </command>
4 <inputs>
5 <param name="input" format="sra" type="data" label="Original file (SRA)"/>
6 <param name="minReadLen" size="10" type="integer" value="10" label="minimum read length to output"/>
7 </inputs>
8 <outputs>
9 <data format="fastq" name="out_file1" />
10 </outputs>
11 <help>
12
13 **What it does**
14
15 This is a wrapper of the fastq-dump tool from sra-toolkit. See http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software
16
17 </help>
18 </tool>