--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mytools/StartGenometriCorr.xml	Fri Mar 09 20:01:43 2012 -0500
@@ -0,0 +1,23 @@
+<tool id="genometric_correlation" name="Genometric Correlation">
+<description>between two files of genomic intervals</description>
+<command interpreter="Rscript --vanilla">
+Start_GenometriCorr.R $config $query $reference $output_options $output
+</command>
+<inputs>
+<param format="text" name="config" type="data" label="Configuration file"/>
+<param format="text" name="query" type="data" label="Query intervals file"/>
+<param format="text" name="reference" type="data" label="Reference intervals file"/>
+<param name="output_options" type="select" label="Type of output">
+<option value="plot">ECDF plots</option>
+<option value="vis">Graphic visualization</option>
+<option value="stats">Text output of statistics</option>
+<option value="plot_vis">All</option>
+</param>
+</inputs>
+<outputs>
+<data name="output" format="pdf"/>
+</outputs>
+<help>
+This tool determines the statistical relationship (if any) between two sets of genomic intervals. Output can be text only, plot (ECDF curves), or a more colorful graphic.
+</help>
+</tool>
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