Mercurial > repos > xuebing > sharplabtool
diff tools/data_source/wormbase.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/data_source/wormbase.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<tool name="Wormbase" id="wormbase" tool_type="data_source"> + <description>server</description> + <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> + <inputs action="http://www.wormbase.org/db/seq/gbgff/c_elegans/" check_values="false" target="_top"> + <display>go to Wormbase server $GALAXY_URL</display> + <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=wormbase" /> + </inputs> + <request_param_translation> + <request_param galaxy_name="URL" remote_name="URL" missing=""> + <append_param separator="&" first_separator="?" join="="> + <value name="d" missing="" /> + <value name="dbkey" missing="" /> + <value name="q" missing="" /> + <value name="s" missing="" /> + <value name="t" missing="" /> + </append_param> + </request_param> + <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> + <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" /> + </request_param_translation> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/> + </outputs> + <options sanitize="False" refresh="True"/> +</tool>