--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/emboss_5/emboss_compseq.xml	Fri Mar 09 19:37:19 2012 -0500
@@ -0,0 +1,42 @@
+<tool id="EMBOSS: compseq14" name="compseq" version="5.0.0">
+  <description>Count composition of dimer/trimer/etc words in a sequence</description>
+  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
+  <command>compseq -sequence $input1 -outfile $out_file1 -word $word -frame $frame -auto</command>
+  <inputs>
+    <param format="fasta" name="input1" type="data">
+      <label>On query</label>
+    </param>
+    <param name="word" size="4" type="text" value="2">
+      <label>Size of word (window) to count</label>
+    </param>
+    <param name="frame" type="select">
+      <label>Frame to inspect</label>
+      <option value="0">All Frames</option>
+      <option value="1">Frame 1</option>
+      <option value="2">Frame 2</option>
+      <option value="3">Frame 3</option>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="compseq" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="2.fasta"/>
+      <param name="word" value="2"/>
+      <param name="frame" value="0"/>
+      <output name="out_file1" file="emboss_compseq_out.compseq"/>
+    </test>
+  </tests>
+  <help>
+.. class:: warningmark
+
+The input dataset needs to be sequences.
+
+-----
+
+    You can view the original documentation here_.
+    
+    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/compseq.html
+  </help>
+</tool>