Mercurial > repos > xuebing > sharplabtool
diff tools/emboss_5/emboss_dreg.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/emboss_5/emboss_dreg.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,22 @@ +<tool id="EMBOSS: dreg27" name="dreg" version="5.0.0"> + <description>Regular expression search of a nucleotide sequence</description> + <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> + <command>dreg -sequence $input1 -outfile $out_file1 -pattern "$pattern" -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command> + <inputs> + <param format="data" name="input1" type="data"> + <label>Sequence 1</label> + </param> + <param name="pattern" size="50" type="text" value="(AUG)"> + <label>Regular expression pattern</label> + </param> + </inputs> + <outputs> + <data format="dreg" name="out_file1" /> + </outputs> + <!-- tests not possible since dreg timestamps output file --> + <help> + You can view the original documentation here_. + + .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dreg.html + </help> +</tool> \ No newline at end of file