--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/emboss_5/emboss_multiple_outputfile_wrapper.pl	Fri Mar 09 19:37:19 2012 -0500
@@ -0,0 +1,19 @@
+#! /usr/bin/perl -w
+use strict;
+
+my $cmd_string = join (" ",@ARGV);
+my $results = `$cmd_string`;
+my @files = split("\n",$results);
+foreach my $thisLine (@files)
+{
+	if ($thisLine =~ /Created /)
+	{
+		$thisLine =~ /[\w|\.]+$/;
+		$thisLine =$&;
+		print "outfile: $thisLine\n";
+	}
+	else
+	{
+		print $thisLine,"\n";
+	}
+}