Mercurial > repos > xuebing > sharplabtool
diff tools/maf/maf_limit_size.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/maf/maf_limit_size.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,36 @@ +<tool id="maf_limit_size1" name="Filter MAF blocks" version="1.0.1"> + <description>by Size</description> + <command interpreter="python">maf_limit_size.py $input1 $out_file1 $min_size $max_size</command> + <inputs> + <page> + <param format="maf" name="input1" label="MAF File" type="data"/> + <param name="min_size" label="Minimum Size" value="0" type="integer"/> + <param name="max_size" label="Maximum Size" value="0" type="integer" help="A maximum size less than 1 indicates no limit"/> + </page> + </inputs> + <outputs> + <data format="maf" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input1" value="3.maf" ftype="maf" /> + <param name="min_size" value="0"/> + <param name="max_size" value="0"/> + <output name="out_file1" file="maf_limit_size1_out.maf" /> + </test> + </tests> + <help> + +**What it does** + +This tool takes a MAF file and a size range and extracts the MAF blocks which fall within the specified range. + +------ + +**Citation** + +If you use this tool, please cite `Blankenberg D, Taylor J, Nekrutenko A; The Galaxy Team. Making whole genome multiple alignments usable for biologists. Bioinformatics. 2011 Sep 1;27(17):2426-2428. <http://www.ncbi.nlm.nih.gov/pubmed/21775304>`_ + + + </help> +</tool>