diff tools/maf/maf_limit_size.xml @ 0:9071e359b9a3

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/maf/maf_limit_size.xml	Fri Mar 09 19:37:19 2012 -0500
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+<tool id="maf_limit_size1" name="Filter MAF blocks" version="1.0.1">
+  <description>by Size</description>
+  <command interpreter="python">maf_limit_size.py $input1 $out_file1 $min_size $max_size</command>
+  <inputs>
+    <page>
+        <param format="maf" name="input1" label="MAF File" type="data"/>
+        <param name="min_size" label="Minimum Size" value="0" type="integer"/>
+        <param name="max_size" label="Maximum Size" value="0" type="integer" help="A maximum size less than 1 indicates no limit"/>
+    </page>
+   </inputs>
+  <outputs>
+    <data format="maf" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="3.maf" ftype="maf" />
+      <param name="min_size" value="0"/>
+      <param name="max_size" value="0"/>
+      <output name="out_file1" file="maf_limit_size1_out.maf" />
+    </test>
+  </tests>
+  <help>
+
+**What it does**
+
+This tool takes a MAF file and a size range and extracts the MAF blocks which fall within the specified range.
+
+------
+
+**Citation**
+
+If you use this tool, please cite `Blankenberg D, Taylor J, Nekrutenko A; The Galaxy Team. Making whole genome multiple alignments usable for biologists. Bioinformatics. 2011 Sep 1;27(17):2426-2428. &lt;http://www.ncbi.nlm.nih.gov/pubmed/21775304&gt;`_
+
+
+  </help>
+</tool>