Mercurial > repos > xuebing > sharplabtool
diff mytools/fastamarkov.xml @ 7:f0dc65e7f6c0
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author | xuebing |
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date | Fri, 09 Mar 2012 19:59:07 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mytools/fastamarkov.xml Fri Mar 09 19:59:07 2012 -0500 @@ -0,0 +1,21 @@ +<tool id="fastamarkov" name="background model"> + <description>of DNA sequence</description> + <command>cat $input | fasta-get-markov -m $m $norc > $output 2> err.txt + + </command> + <inputs> + <param name="input" type="data" format="fasta" label="Sequence file (FASTA)"/> + <param name="m" size="10" type="integer" value="0" label="Order of Markov model to use"/> + <param name="norc" label="Combine forward and reverse complement frequencies" type="boolean" truevalue="" falsevalue="-norc" checked="True"/> + </inputs> + <outputs> + <data format="txt" name="output" /> + </outputs> + <help> + +**What it does** + +This tool generates a markov model from a fasta sequence file. + + </help> +</tool>